made by pyLODE 2.13.2

The SPHN RDF Schema

Metadata

URI
https://biomedit.ch/rdf/sphn-schema/sphn
Version URI
https://biomedit.ch/rdf/sphn-schema/sphn/2024/2
Prior Version
https://biomedit.ch/rdf/sphn-schema/sphn/2024/1
Imports
http://purl.obolibrary.org/obo/eco/releases/2023-09-03/eco.owl
http://purl.obolibrary.org/obo/genepio/releases/2023-08-19/genepio.owl
http://purl.obolibrary.org/obo/geno/releases/2023-10-08/geno.owl
http://purl.obolibrary.org/obo/obi/2023-09-20/obi.owl
http://purl.obolibrary.org/obo/so/2021-11-22/so.owl
http://snomed.info/sct/900000000000207008/version/20231201
http://www.ebi.ac.uk/efo/releases/v3.61.0/efo.owl
https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.4.owl
https://biomedit.ch/rdf/sphn-resource/atc/2024/1
https://biomedit.ch/rdf/sphn-resource/chop/2024/4
https://biomedit.ch/rdf/sphn-resource/edam/1.25
https://biomedit.ch/rdf/sphn-resource/emdn/2021-09-29/1
https://biomedit.ch/rdf/sphn-resource/hgnc/20231215
https://biomedit.ch/rdf/sphn-resource/icd-10-gm/2024/3
https://biomedit.ch/rdf/sphn-resource/loinc/2.76/1
https://biomedit.ch/rdf/sphn-resource/ucum/2024/1
License
https://creativecommons.org/licenses/by/4.0/
SPHN RDF Schema
RDF (turtle)
External Terminologies in RDF
BioMedIT Portal (with Switch edu-ID)

Description

The SPHN RDF Schema describing concepts defined in the official SPHN Dataset

Table of Contents

  1. Schema Explorer
  2. Classes
  3. Deprecated Classes
  4. Valuesets
  5. Object Properties
  6. Datatype Properties
  7. Annotation Properties
  8. Named Individuals
  9. Namespaces
  10. Legend

Schema Explorer

SchemaScope

URI https://schemascope.dcc.sib.swiss/
Description

Interactive tool to inspect the RDF Schema and its properties. Please note that not all details are included, consult pyLODE for full details of individual concepts.

Preview

Classes

Access Device c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice
Description

product intended for medical use to gain access to the body, such as cannula, tube, catheter or drainage

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 105789008 | Cannula/tube/catheter, device (physical object) |c
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has product codeop
0 .. 1 Terminologyc or Codec
has type codeop
0 .. 1 Yes
has softwareop
0 .. * Softwarec
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 105789008 | Cannula/tube/catheter, device (physical object) |c

Used in
(In the range of)
has medical deviceop

Access Device Presence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence
Description

application of medical access device, such as cannula, tube, catheter or drainage

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has resting pointop
0 .. 1 Body Sitec
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has insertion pointop
0 .. 1 Body Sitec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
1 .. 1 Access Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Administrative Case c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeCase
Description

administrative artifact for billing according to national healthcare billing guidelines, e.g. Swiss Diagnosis Related Groups, and local settings

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has discharge locationop
0 .. 1 Locationc
has discharge datetimedp
0 .. 1 xsd:dateTimec
has identifierdp
0 .. 1 xsd:stringc
has origin locationop
0 .. 1 Locationc
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has care handlingop
0 .. 1 Care Handlingc
has admission datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None
Used in
(In the range of)
has administrative caseop

Administrative Sex c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex
Description

the sex of the individual used for administrative purposes

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 248152002 | Female (finding) |c SNOMED 248153007 | Male (finding) |c SNOMED 32570681000036106 | Indeterminate sex (finding) |c

Adverse Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent
Description

results from an intervention that caused unintentional harm

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 281647001 | Adverse reaction (disorder) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has onset datetimedp
0 .. 1 xsd:dateTimec
has outcomeop
0 .. 1 Adverse Event outcomec
has interventiondp
0 .. 1 xsd:stringc
has codeop
1 .. 1 Codec
has severity codeop
0 .. 1 Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has consequencesop
0 .. 1 Adverse Event consequencesc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None
Notes

sphn:hasSeverityCode allowed coding system: CTCAE or other

sphn:hasCode allowed coding system: MedDRA

Age c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Age
Description

time elapsed since birth of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397669002 | Age (qualifier value) |c
LOINC 30525-0 | Age |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has determination datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Yes
has source systemop
1 .. * Source Systemc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:minc ucum:hc ucum:dc ucum:wkc ucum:moc ucum:ac

Used in
(In the range of)
has subject ageop

Allergen c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Allergen
Description

any substance, product or physical force producing immediate hypersensitivity

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. * Yes
Restrictions
has codeop : descendants of the given classes are allowed

Codec SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c sphn-atc:ATCc

Notes

sphn:hasCode allowed coding system: SNOMED CT, ATC, GTIN

Used in
(In the range of)
has allergenop

Allergy c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Allergy
Description

risk of harmful or undesirable, physiological response which is unique to an individual and associated with exposure to an allergen

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has first record datetimedp
0 .. 1 xsd:dateTimec
has allergenop
0 .. 1 Allergenc
has severity codeop
0 .. 1 Yes
has last reaction datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has reaction type codeop
0 .. 1 Yes
has verification status codeop
0 .. 1 Yes
Restrictions
has severity codeop : descendants of the given classes are not allowed

SNOMED 723505004 | Low risk (qualifier value) |c SNOMED 723509005 | High risk (qualifier value) |c SNOMED 723507007 | Unable to determine risk (qualifier value) |c

has reaction type codeop : descendants of the given classes are not allowed

SNOMED 609328004 | Allergic disposition (finding) |c SNOMED 782197009 | Intolerance to substance (finding) |c

has verification status codeop : descendants of the given classes are not allowed

SNOMED 410605003 | Confirmed present (qualifier value) |c SNOMED 415684004 | Suspected (qualifier value) |c SNOMED 723511001 | Refuted (qualifier value) |c SNOMED 723510000 | Entered in error (qualifier value) |c

Allergy Episode c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode
Description

manifestation of an allergic reaction following an exposure to an allergen

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has durationop
0 .. 1 Quantityc
has exposureop
0 .. 1 Exposurec
has manifestation codeop
0 .. 1 Yes
has allergenop
1 .. 1 Allergenc
has certainty codeop
0 .. 1 Yes
has severity codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
Restrictions
has manifestation codeop : descendants of the given classes are allowed

SNOMED 404684003 | Clinical finding (finding) |c

has certainty codeop : descendants of the given classes are not allowed

SNOMED 415684004 | Suspected (qualifier value) |c SNOMED 410592001 | Probably present (qualifier value) |c SNOMED 410605003 | Confirmed present (qualifier value) |c

has severity codeop : descendants of the given classes are not allowed

SNOMED 255604002 | Mild (qualifier value) |c SNOMED 6736007 | Moderate (severity modifier) (qualifier value) |c SNOMED 24484000 | Severe (severity modifier) (qualifier value) |c

Notes

For sphn:hasExposure, instances of sphn:TobaccoExposure are not allowed

Antimicrobial Susceptibility Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest
Description

specific lab test performed on an isolate against a chemical agent for determining antimicrobial susceptibility

Schema representation
Parents
Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has resultop
1 .. * Antimicrobial Susceptibility Resultc
has instrumentop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has test kitop
0 .. 1 Lab Analyzerc
has chemical agentop
1 .. 1 Substancec or Drugc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 14788002 | Antimicrobial susceptibility test (procedure) |c

Used in
(In the range of)
has lab testop

Antimicrobial Susceptibility Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on an isolate at a given time for determining antimicrobial susceptibility

Schema representation
Parents
Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has sampleop
1 .. 1 Isolatec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has lab testop
1 .. * Antimicrobial Susceptibility Lab Testc
Restrictions None

Antimicrobial Susceptibility Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult
Description

result of a antimicrobial susceptibility lab analysis

Schema representation
Parents
Lab Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
0 .. 1 Quantityc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
has codeop
0 .. 1 Yes
has string valuedp
0 .. 1 xsd:stringc
has standard guidelinedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 131196009 | Susceptible (qualifier value) |c SNOMED 1255965005 | Susceptible with increased exposure (qualifier value) |c SNOMED 30714006 | Resistant (qualifier value) |c

Used in
(In the range of)
has resultop

Assay c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Assay
Description

a process with the objective to produce information about a sample by examining it

Schema representation
Meaning binding
(Equivalent-classes)
obi:OBI_0000070c
Parents
SPHN Conceptc
Children
(Sub-classes)
Sequencing Assayc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has sampleop
0 .. * Samplec
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has identifierdp
0 .. 1 xsd:stringc
has codeop
1 .. 1 Yes
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has data providerop
1 .. 1 Data Providerc
has data fileop
0 .. * Data Filec
has predecessorop
0 .. * Sample Processingc
Restrictions
has codeop : descendants of the given classes are allowed

obi:OBI_0000070c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EFO, OBI or other

Used in
(In the range of)
has predecessorop

Assessment c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Assessment
Description

assessment scale, classification, staging or scoring system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 254291000 | Staging and scales (staging scale) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tumor Grade Assessmentc
Tumor Stage Assessmentc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has componentop
0 .. * Assessment Componentc
has codeop
0 .. 1 Yes
has namedp
0 .. 1 xsd:stringc
has resultop
0 .. 1 Assessment Resultc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 254291000 | Staging and scales (staging scale) |c

Used in
(In the range of)
has assessmentop

Assessment Component c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent
Description

component of an assessment

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has resultop
0 .. 1 Assessment Resultc
has codeop
0 .. 1 Yes
has namedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363787002 | Observable entity (observable entity) |c

Used in
(In the range of)
has componentop

Assessment Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent
Description

evaluation at a given time, which takes into account a predefined scale, classification, staging or scoring system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 386053000 | Evaluation procedure (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tumor Grade Assessment Eventc
Tumor Stage Assessment Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has assessmentop
1 .. 1 Assessmentc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Assessment Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult
Description

outcome of an assessment

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
0 .. 1 Quantityc
has codeop
0 .. 1 Codec or Terminologyc
has string valuedp
0 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has resultop

Billed Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis
Description

discharge diagnosis used for the billing system (e.g. for building the Diagnosis Related Groups) according to guidelines of the national authority (e.g. Swiss Federal Office of Public Health), e.g. K35.3 acute appendicitis with localized peritonitis

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 38999-9 | Hospital discharge DRG [Interpretation] |c
SNOMED 89100005 | Final diagnosis (discharge) (contextual qualifier) (qualifier value) |c
Parents
Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has subject ageop
0 .. 1 Agec
has codeop
1 .. 1 Yes
has rankop
0 .. 1 Billed Diagnosis rankc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions
has codeop : descendants of the given classes are allowed

icd-10-gm:ICD-10-GMc

Billed Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure
Description

procedure, coded for billing (e.g. for building the Diagnosis Related Groups) according to guidelines of the national authority (e.g. Swiss Federal Office of Public Health), e.g. Z57.34 open biopsy of the urinary bladder

Schema representation
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. 1 Yes
has rankop
0 .. 1 Billed Procedure rankc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has intentop
0 .. 1 Intentc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
Restrictions
has codeop : descendants of the given classes are allowed

CHOP CHOP | CHOP |c

Biobanksample c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample
Description

biosample stored in a biobank

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has biobank namedp
1 .. 1 xsd:stringc
has identifierdp
1 .. 1 xsd:stringc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has sampleop
1 .. 1 Samplec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Birth c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Birth
Description

the event of being born

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has gestational ageop
0 .. 1 Gestational Age At Birthc
has dateop
0 .. 1 Birth Datec
has medical deviceop
0 .. * Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has delivery mode codeop
0 .. 1 Yes
has countryop
0 .. 1 Countryc
Restrictions
has delivery mode codeop : descendants of the given classes are allowed

SNOMED 118215003 | Delivery finding (finding) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Birth Date c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate
Description

the date and time of birth of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 184099003 | Date of birth (observable entity) |c
LOINC 21112-8 | Birth date |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has monthdp
0 .. 1 xsd:gMonthc
has timedp
0 .. 1 xsd:timec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has yeardp
1 .. 1 xsd:gYearc
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has daydp
0 .. 1 xsd:gDayc
has comparatorop
0 .. 1 Comparatorc
Restrictions None
Used in
(In the range of)
has dateop

Blood Pressure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure
Description

blood pressure of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 75367002 | Blood pressure (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
0 .. 1 Time Series Data Filec
has mean pressureop
0 .. 1 Yes
has systolic pressureop
0 .. 1 Yes
has diastolic pressureop
0 .. 1 Yes
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has mean pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

has systolic pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

has diastolic pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

Used in
(In the range of)
has resultop

Blood Pressure Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressureMeasurement
Description

measurement process of a blood pressure on an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 46973005 | Blood pressure taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Yes
has resultop
1 .. * Blood Pressurec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 716777001 | Hemodynamic monitoring (regime/therapy) |c SNOMED 46973005 | Blood pressure taking (procedure) |c

has body siteop / has codeop : descendants of the given classes are allowed

SNOMED 113257007 | Structure of cardiovascular system (body structure) |c SNOMED 40983000 | Structure of upper extremity between shoulder and elbow (body structure) |c SNOMED 68367000 | Thigh structure (body structure) |c SNOMED 8205005 | Wrist region structure (body structure) |c SNOMED 7569003 | Finger structure (body structure) |c SNOMED 344001 | Ankle region structure (body structure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Body Height c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight
Description

height of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 50373000 | Body height measure (observable entity) |c
LOINC 8302-2 | Body height |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Body Height Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement
Description

measurement of the height of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 14456009 | Measuring height of patient (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. 1 Body Heightc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Body Mass Index c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex
Description

body weight in kilograms divided by the square of the body height in meters

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 60621009 | Body mass index (observable entity) |c
LOINC 39156-5 | Body mass index (BMI) [Ratio] |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has determination datetimedp
0 .. 1 xsd:dateTimec
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:kgperm2c

Body Position c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition
Description

position of the body during a certain time interval, examination or therapy

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397155001 | Body position (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 9851009 | Body position finding (finding) |c

Body Site c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodySite
Description

any anatomical structure, any nonspecific and anatomical site, as well as morphologic abnormalities

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 123037004 | Body structure (body structure) |c
LOINC 39111-0 | Body site |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has lateralityop
0 .. 1 Lateralityc
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 123037004 | Body structure (body structure) |c

Used in
(In the range of)
has body siteop
has resting pointop
has insertion pointop

Body Surface Area c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea
Description

two dimensional measure of the outer layer of the body

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 8277-6 | Body surface area |c
SNOMED 301898006 | Body surface area (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has determination datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Yes
has calculation methodop
0 .. 1 Body Surface Area calculation methodc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:m2c

Body Temperature c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature
Description

body temperature of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 386725007 | Body temperature (observable entity) |c
LOINC 8310-5 | Body temperature |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has resultop

Body Temperature Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement
Description

measurement of the body temperature of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 56342008 | Temperature taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has resultop
1 .. * Body Temperaturec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Body Weight c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight
Description

weight of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 27113001 | Body weight (observable entity) |c
LOINC 29463-7 | Body weight |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Body Weight Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeightMeasurement
Description

measurement of the weight of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 39857003 | Weighing patient (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. 1 Body Weightc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Cardiac Index c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex
Description

cardiac output in relation to the body surface area (BSA)

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 54993008 | Cardiac index (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has determination datetimedp
0 .. 1 xsd:dateTimec
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has method codeop
0 .. 1 Yes
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:Lperminperm2c

has method codeop : descendants of the given classes are allowed

SNOMED 63075001 | Monitoring of cardiac output/cardiac index (regime/therapy) |c

Cardiac Output c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput
Description

volume of blood passing through the heart per unit of time

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 82799009 | Cardiac output (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has resultop

Cardiac Output Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement
Description

measurement of the cardiac output of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 117610000 | Measurement of cardiac output (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. * Cardiac Outputc
has end datetimedp
0 .. 1 xsd:dateTimec
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Care Handling c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling
Description

describes the relationship between the individual and care provider institute

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 225365006 | Care regime (regime/therapy) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has type codeop
1 .. 1 Yes
Restrictions
has type codeop : descendants of the given classes are not allowed

SNOMED 394656005 | Inpatient care (regime/therapy) |c SNOMED 371883000 | Outpatient procedure (procedure) |c SNOMED 304903009 | Provision of day care (regime/therapy) |c

Used in
(In the range of)
has care handlingop

Chromosomal Location c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation
Description

chromosome locus defined as cytoband intervals

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000830 | chromosome_part |c
GENO 0000614 | chromosomal region |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has chromosomeop
1 .. 1 Chromosomec
has start cytoband codeop
1 .. 1 Codec
has end cytoband codeop
1 .. 1 Codec
Restrictions None
Notes

sphn:hasEndCytobandCode allowed coding system: ISCN

sphn:hasStartCytobandCode allowed coding system: ISCN

Used in
(In the range of)
has chromosomal locationop

Chromosome c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome
Description

thread-like structure composed of tightly coiled DNA and histones or circular DNA (mitochondrial DNA). These structures act as carriers of genetic information

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 48000-4 | Chromosome [Identifier] in Blood or Tissue by Molecular genetics method |c
SNOMED 91272006 | Chromosome (cell structure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 91272006 | Chromosome (cell structure) |c

Used in
(In the range of)
has chromosomeop

Circumference c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Circumference
Description

circumference of a body site

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 248365001 | Circumference measure (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Circumference Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement
Description

measurement of the circumference measure of a body site

Schema representation
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Yes
has resultop
1 .. 1 Circumferencec
has end datetimedp
0 .. 1 xsd:dateTimec
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
Restrictions
has body siteop / has codeop : descendants of the given classes are not allowed

SNOMED 69536005 | Head structure (body structure) |c SNOMED 33673004 | Structure of waist (surface region) (body structure) |c SNOMED 29836001 | Hip region structure (body structure) |c SNOMED 45048000 | Neck structure (body structure) |c

has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Civil Status c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus
Description

the civil status indicates the familial and social situation of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 365581002 | Finding of marital or partnership status (finding) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. 1 Yes
has event datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 125681006 | Single person (finding) |c SNOMED 87915002 | Married (finding) |c SNOMED 33553000 | Widowed (finding) |c SNOMED 20295000 | Divorced (finding) |c SNOMED 14012001 | Common law partnership (finding) |c SNOMED 266945001 | Broken with partner (finding) |c

Code c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Code
Description

symbols and/or expressions defined in a coding system

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
1 .. 1 xsd:stringc
has coding system and versiondp
1 .. 1 xsd:stringc
has namedp
0 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has mode codeop
has graft type codeop
has allele origin codeop
has method codeop
has severity codeop
has cell count estimate codeop
has type codeop
has staining result codeop
has relative temporality codeop
has institution codeop
has codeop
has route codeop
has material type codeop
has format codeop
has circumstance codeop
has target enrichment kit codeop
has reaction type codeop
has verification status codeop
has agent codeop
has reason to stop codeop
has condition codeop
has delivery mode codeop
has output codeop
has staining method codeop
has certainty codeop
has status codeop
has product codeop
has regularity codeop
has start cytoband codeop
has zygosity codeop
has acquistion codeop
has kit codeop
has degree codeop
has end cytoband codeop
has manifestation codeop
has administration route codeop

Copy Number Variation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation
Description

structural genomic variant characterized by relative changes in the number of copies of a specific genomic segment compared to a reference sequence

Schema representation
Meaning binding
(Equivalent-classes)
SO 0001019 | copy_number_variation |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
1 .. 1 Yes
has total copy numberop
0 .. 1 Yes
has genomic positionop
0 .. 1 Genomic Positionc
has chromosomal locationop
0 .. 1 Chromosomal Locationc
has affected genomic featureop
0 .. * Genec
Restrictions
has type codeop : descendants of the given classes are not allowed

SO 0001742 | copy_number_gain |c SO 0001743 | copy_number_loss |c

has total copy numberop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblcopycbrc

Country c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Country
Description

distinct part of the world, such as a state, nation, or other political entity, often but not necessarily a sovereign state

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 223369002 | Country (geographic location) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 223369002 | Country (geographic location) |c

Used in
(In the range of)
has countryop
has associated countryop

Data Determination c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination
Description

describes how the data was determined, e.g. measured, calculated

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has method codeop
1 .. 1 Yes
Restrictions
has method codeop : descendants of the given classes are not allowed

SNOMED 258104002 | Measured (qualifier value) |c SNOMED 258090004 | Calculated (qualifier value) |c SNOMED 87982008 | Manual (qualifier value) |c SNOMED 414135002 | Estimated (qualifier value) |c SNOMED 263760002 | Forced (qualifier value) |c

Used in
(In the range of)
has data determinationop

Data File c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataFile
Description

electronic resource of information, which can be stored, accessed and transferred as a single unit

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Time Series Data Filec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has format codeop
0 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
has namedp
0 .. 1 xsd:stringc
has source systemop
1 .. * Source Systemc
has uniform resource identifierdp
0 .. 1 xsd:stringc
has creation datetimedp
0 .. 1 xsd:dateTimec
has encodingop
0 .. 1 Data File encodingc
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has hashop
0 .. 1 Hashc
Restrictions
has format codeop : descendants of the given classes are allowed

edam:format_1915c

Used in
(In the range of)
has outputop
has data fileop
has inputop

Data Processing c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing
Description

a process that produces output data from input data

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Sequencing Analysisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has quality control metricop
0 .. * Quality Control Metricc
has codeop
1 .. 1 Yes
has inputop
0 .. * Data Filec
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has softwareop
0 .. 1 Softwarec
has outputop
0 .. * Data Filec
has data providerop
1 .. 1 Data Providerc
has predecessorop
0 .. * Data Processingc or Assayc
Restrictions
has codeop : descendants of the given classes are allowed

edam:operation_0004c obi:OBI_0200000c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EDAM, OBI or other

Used in
(In the range of)
has predecessorop

Data Provider c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider
Description

provider of data of interest

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has departmentop
0 .. 1 Departmentc
has institution codeop
1 .. 1 Codec
has categoryop
0 .. 1 Data Provider categoryc
Restrictions None
Notes

sphn:hasInstitutionCode allowed coding system: UID

Used in
(In the range of)
has data providerop

Data Release c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease
Description

Metadata about the release of the data

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has extraction datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
dcterms:conformsTo
1 .. 1
Restrictions None

Death c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Death
Description

cessation of all vital bodily functions

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 419620001 | Death (event) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has circumstance codeop
0 .. 1 Yes
has dateop
0 .. 1 Death Datec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has condition codeop
0 .. 1 Yes
Restrictions
has circumstance codeop : descendants of the given classes are allowed

SNOMED 419620001 | Death (event) |c icd-10-gm:ICD-10-GMc

has condition codeop : descendants of the given classes are allowed

SNOMED 64572001 | Disease (disorder) |c icd-10-gm:ICD-10-GMc

Notes

sphn:hasConditionCode allowed coding system: SNOMED CT, ICD-10-GM

sphn:hasCircumstanceCode allowed coding system: SNOMED CT, ICD-10-GM

Used in
(In the range of)
has deathop

Death Date c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate
Description

the date and time of death of the individual

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 81954-0 | Date of death [Date] |c
SNOMED 399753006 | Date of death (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has daydp
0 .. 1 xsd:gDayc
has monthdp
0 .. 1 xsd:gMonthc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has timedp
0 .. 1 xsd:timec
has yeardp
1 .. 1 xsd:gYearc
has source systemop
1 .. * Source Systemc
Restrictions None
Used in
(In the range of)
has dateop

Department c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Department
Description

dedicated division of an organization

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has namedp
1 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has departmentop

Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis
Description

determination of the presence of a disease, condition, or injury from expressed signs and symptoms and assessments such as physical examination, laboratory test, or the like

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 439401001 | Diagnosis (observable entity) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Billed Diagnosisc
Oncology Diagnosisc
Nursing Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has subject ageop
0 .. 1 Agec
has codeop
1 .. * Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, ICD-10-GM, ICD-O-3 Topography, ICD-O-3 Morphology, NANDA, ORDO or other

Used in
(In the range of)
has indication to startop

Drug c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Drug
Description

any substance with the intent to prevent, diagnose, treat, or relieve symptoms of a disease or abnormal condition

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 410942007 | Drug or medicament (substance) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has active ingredientop
0 .. * Substancec
has articleop
0 .. 1 Drug Articlec
has source systemop
1 .. * Source Systemc
has quantityop
0 .. 1 Quantityc
has inactive ingredientop
0 .. * Substancec
Restrictions None
Used in
(In the range of)
has drugop
has chemical agentop

Drug Administration Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent
Description

single event at which a drug was administered to the patient; this could be a single time point in case of a pill/cream or a duration in case of a single infusion pack or a single patch; one or many drug administration events are initiated by a drug prescription depending on the frequency stated in the prescription

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 182832007 | Procedure related to management of drug administration (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has administration route codeop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has durationop
0 .. 1 Quantityc
has drugop
1 .. 1 Drugc
has time patternop
0 .. 1 Time Patternc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has reason to stop codeop
0 .. 1 Yes
Restrictions
has administration route codeop : descendants of the given classes are allowed

SNOMED 284009009 | Route of administration value (qualifier value) |c

has reason to stop codeop : descendants of the given classes are not allowed

SNOMED 441308009 | New diagnosis (observable entity) |c SNOMED 395009001 | Medication stopped - side effect (situation) |c SNOMED 182872003 | Drug discontinued - too expensive (situation) |c SNOMED 182846007 | Doctor stopped drugs - medical aim achieved (situation) |c SNOMED 395007004 | Medication stopped - ineffective (situation) |c SNOMED 31438003 | Drug resistance (disorder) |c SNOMED 182845006 | Doctor stopped drugs - avoid interaction (situation) |c SNOMED 182844005 | Doctor stopped drugs - patient dislikes (situation) |c SNOMED 419620001 | Death (event) |c SNOMED 399307001 | Lost to follow-up (finding) |c SNOMED 74964007 | Other (qualifier value) |c

Used in
(In the range of)
has oxygen flow rateop

Drug Article c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle
Description

general details identifying a medication on the level of its commercial article

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has manufactured dose formop
0 .. 1 Pharmaceutical Dose Formc
has codeop
0 .. 1 Codec
has source systemop
1 .. * Source Systemc
has namedp
0 .. 1 xsd:stringc
Restrictions None
Notes

sphn:hasCode allowed coding system: GTIN

Used in
(In the range of)
has articleop

Drug Prescription c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription
Description

plan that defines at which frequency a drug should be administered to a patient with a given quantity; at every frequency time point a drug administration event should occur

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 33633005 | Prescription of drug (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has drugop
1 .. 1 Drugc
has time patternop
0 .. 1 Time Patternc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has last administration datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has first administration datetimedp
1 .. 1 xsd:dateTimec
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has intentop
0 .. * Intentc
has frequencyop
0 .. 1 Quantityc
has indication to startop
0 .. * Diagnosisc
has administration route codeop
0 .. 1 Yes
Restrictions
has administration route codeop : descendants of the given classes are allowed

SNOMED 284009009 | Route of administration value (qualifier value) |c

Electrocardiogram c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram
Description

output of an electrocardiographic procedure

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
1 .. * Data Filec
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has outputop

Electrocardiographic Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure
Description

electrographic procedure on the heart which results in a graph of voltage versus time visualizing the electrical activity of the heart muscle using electrodes placed on the skin

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 29303009 | Electrocardiographic procedure (procedure) |c
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject physiologic stateop
0 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has number of leadsop
0 .. 1 Quantityc
has administrative caseop
0 .. 1 Administrative Casec
has outputop
0 .. 1 Electrocardiogramc
has codeop
1 .. * Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has subject physiologic stateop / has codeop : descendants of the given classes are not allowed

SNOMED 128975004 | Resting state (finding) |c SNOMED 128976003 | Exercise state (finding) |c

has intentop / has codeop : descendants of the given classes are not allowed

SNOMED 360156006 | Screening - procedure intent (qualifier value) |c SNOMED 261004008 | Diagnostic intent (qualifier value) |c

has codeop : descendants of the given classes are allowed

SNOMED 29303009 | Electrocardiographic procedure (procedure) |c

Excluded Disorder c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder
Description

determination of the absence of a disease

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 315215002 | Disorder excluded (situation) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has record datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. * Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, ICD-10-GM, ICD-O-3 Topography, ICD-O-3 Morphology, NANDA, ORDO or other

Exposure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Exposure
Description

contact between a physical, biological, or chemical agent and an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 418715001 | Exposure to potentially harmful entity (event) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tobacco Exposurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has agent codeop
0 .. 1 Yes
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
0 .. 1 Quantityc
has end datetimedp
0 .. 1 xsd:dateTimec
has durationop
0 .. 1 Quantityc
has degree codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has route codeop
0 .. * Yes
Restrictions
has agent codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

has degree codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

has route codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Used in
(In the range of)
has exposureop

Fluid Balance c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance
Description

difference between fluid input and output during a specified time interval

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 364396009 | Fluid balance observable (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Quantityc
has fluid input outputop
0 .. * Fluid Input Outputc
has end datetimedp
1 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions None

Fluid Input Output c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput
Description

gain or loss of fluid that impacts the fluid balance

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has substanceop
1 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
1 .. 1 xsd:dateTimec
Restrictions
has substanceop / has codeop : descendants of the given classes are allowed

SNOMED 33463005 | Liquid substance (substance) |c

Used in
(In the range of)
has fluid input outputop

Follow Up c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp
Description

procedure for following up on the patient status

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. 1 Vital Statusc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 386473003 | Telephone follow-up (procedure) |c SNOMED 281036007 | Follow-up consultation (procedure) |c

Gene c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Gene
Description

fundamental unit of heredity that contains necessary elements to encode for a transcript

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 67271001 | Gene (substance) |c
SO 0000704 | gene |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has transcriptop
0 .. * Transcriptc
has organismop
0 .. 1 Organismc
has proteinop
0 .. * Proteinc
has codeop
1 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: HGNC, NCBI Gene, Ensembl or other

Used in
(In the range of)
has focus geneop
has geneop
has target moleculeop
has affected genomic featureop

Gene Panel c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel
Description

collection of genes that have been grouped for testing

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has focus geneop
1 .. * Genec
has data fileop
0 .. * Data Filec
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has gene panelop

Genetic Variation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GeneticVariation
Description

a genetic variation occurring at a defined position

Schema representation
Meaning binding
(Equivalent-classes)
SO 0001060 | sequence_variant |c
GENO 0000476 | variant |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Genomic Insertionc
Genomic Deletionc
Single Nucleotide Variationc
Copy Number Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has chromosomal locationop
0 .. 1 Chromosomal Locationc
has genomic positionop
0 .. 1 Genomic Positionc
Restrictions None
Used in
(In the range of)
has genetic variationop

Genomic Deletion c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion
Description

genetic variant involving the deletion of a specific location in a DNA sequence

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000159 | deletion |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has genomic positionop
0 .. 1 Genomic Positionc
has genomic sequencedp
0 .. 1 xsd:stringc
has sequence lengthop
0 .. 1 Yes
has chromosomal locationop
0 .. 1 Chromosomal Locationc
Restrictions
has sequence lengthop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblbase_paircbrc

Genomic Insertion c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion
Description

genetic variant involving the addition of a DNA sequence in a specific location

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000667 | insertion |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has genomic sequencedp
0 .. 1 xsd:stringc
has sequence lengthop
0 .. 1 Yes
has genomic positionop
0 .. 1 Genomic Positionc
has chromosomal locationop
0 .. 1 Chromosomal Locationc
Restrictions
has sequence lengthop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblbase_paircbrc

Genomic Position c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition
Description

genomic position with respect to a reference

Schema representation
Meaning binding
(Equivalent-classes)
GENO 0000902 | genomic feature location |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has coordinate conventionop
1 .. 1 Genomic Position coordinate conventionc
has startdp
1 .. 1 xsd:doublec
has referenceop
1 .. 1 Reference Sequencec
has enddp
1 .. 1 xsd:doublec
Restrictions None
Used in
(In the range of)
has genomic positionop

Gestational Age At Birth c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth
Description

gestational age of a child at birth

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 76516-4 | Gestational age--at birth |c
SNOMED 412726003 | Length of gestation at birth (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:dc

Used in
(In the range of)
has gestational ageop

Hash c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Hash
Description

irreversible unique number computed on an information entity used to check its validity and integrity

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has algorithmop
1 .. 1 Hash algorithmc
has string valuedp
1 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has hashop

Healthcare Encounter c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter
Description

an interaction between an individual and a specific unit or service of a healthcare provider institute, e.g. emergency, intensive care unit, for the purpose of providing healthcare service(s) or assessing the health status of an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 308335008 | Patient encounter procedure (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
1 .. 1 xsd:stringc
has current locationop
1 .. 1 Locationc
has origin locationop
0 .. 1 Locationc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has target locationop
0 .. 1 Locationc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has therapeutic areaop
0 .. 1 Therapeutic Areac
Restrictions None

Healthcare Primary Information System c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem
Description

primary source system of the healthcare data

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 706593004 | Information system (physical object) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has data providerop
0 .. 1 Data Providerc
has namedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 706593004 | Information system (physical object) |c

Used in
(In the range of)
has primary systemop

Heart Rate c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate
Description

frequency of the heart beats, i.e. the number of time a heart beats per unit of time

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 8867-4 | Heart rate |c
SNOMED 364075005 | Heart rate (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
has regularity codeop
0 .. 1 Yes
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has regularity codeop : descendants of the given classes are not allowed

SNOMED 271636001 | Pulse regular (finding) |c SNOMED 61086009 | Pulse irregular (finding) |c

Used in
(In the range of)
has resultop

Heart Rate Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement
Description

measurement of the heart rate of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 65653002 | Pulse taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. * Heart Ratec
has subject physiologic stateop
0 .. 1 Physiologic Statec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Home Address c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress
Description

permanent place of residence of an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397635003 | Address (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has countryop
0 .. 1 Countryc
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has swiss socio economic positionop
0 .. * Swiss Socio Economic Positionc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Imaging Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure
Description

imaging procedure used for examination of a body site or function

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 363679005 | Imaging (procedure) |c
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Intentc
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. * Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363679005 | Imaging (procedure) |c

Implant c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Implant
Description

implanted medical device, includes, e.g., heart valve prostheses or joint prostheses

Schema representation
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
1 .. 1 Yes
has softwareop
0 .. * Softwarec
has product codeop
0 .. 1 Terminologyc or Codec
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 40388003 | Implant, device (physical object) |c SNOMED 14106009 | Cardiac pacemaker, device (physical object) |c

Used in
(In the range of)
has medical deviceop

Implant Presence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence
Description

presence of an implanted medical device

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has medical deviceop
1 .. 1 Implantc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions None

Inhaled Oxygen Concentration c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#InhaledOxygenConcentration
Description

fraction of inspired oxygen (FiO2) either calculated knowing the device used and the amount of oxygen administered or coming from the respiratory system settings

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 250774007 | Inspired oxygen concentration (observable entity) |c
LOINC 3150-0 | Inhaled oxygen concentration |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has oxygen flow rateop
0 .. 1 Drug Administration Eventc
has oxygen equipmentop
0 .. 1 Medical Devicec
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Yes
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:percentc

Notes

For sphn:hasOxygenEquipment, instances of sphn:LabAnalyzer, sphn:Implant are not allowed

Insurance Status c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus
Description

status of the patient's medical insurance

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 87520-3 | Coverage type |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has coverage typeop
1 .. 1 Insurance Status coverage typec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions None

Intent c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Intent
Description

treatment or procedure purpose

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 363675004 | Intents (nature of procedure values) (qualifier value) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363675004 | Intents (nature of procedure values) (qualifier value) |c

Used in
(In the range of)
has intentop

Interpretation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation
Description

process of making sense of an outcome to derive meaningful conclusions

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Reference Interpretationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has standard guidelinedp
0 .. * xsd:stringc
has inputop
0 .. * SPHN Conceptc
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has outputop
1 .. * SPHN Conceptc
has data providerop
1 .. 1 Data Providerc
Restrictions None

Isolate c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Isolate
Description

a specific individual microbe and its clone separated on a single occasion from a sample taken from a host or culture system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 119303007 | Microbial isolate specimen (specimen) |c
Parents
Samplec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
0 .. * xsd:stringc
has collection datetimedp
1 .. 1 xsd:dateTimec
has material type codeop
0 .. * Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has shared identifierdp
0 .. * xsd:anyURIc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has organismop
0 .. 1 Organismc
has primary containerop
0 .. 1 Sample primary containerc
has fixation typeop
0 .. 1 Sample fixation typec
Restrictions
has material type codeop : descendants of the given classes are allowed

SNOMED 123038009 | Specimen (specimen) |c

Used in
(In the range of)
has sampleop

Lab Analyzer c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer
Description

laboratory analyzer used to assess medical laboratory samples

Schema representation
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
0 .. 1 Yes
has softwareop
0 .. * Softwarec
has product codeop
0 .. 1 Terminologyc or Codec
Restrictions
has type codeop : descendants of the given classes are allowed

Codec emdn:EMDNc

Notes

sphn:hasProductCode allowed coding system: UDI-DI from GUDID or other

sphn:hasTypeCode allowed coding system: GMDN, EMDN

Used in
(In the range of)
has test kitop
has instrumentop

Lab Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabResult
Description

outcome, value, or information which gives insight about a laboratory test

Schema representation
Parents
Resultc
Children
(Sub-classes)
Microbiology Microscopy Resultc
Microorganism Identification Resultc
Antimicrobial Susceptibility Resultc
Microbiology Biomolecule Presence Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Codec or Terminologyc
has string valuedp
0 .. 1 xsd:stringc
has quantityop
0 .. 1 Quantityc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
Restrictions None
Used in
(In the range of)
has resultop

Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabTest
Description

specific laboratory test performed to analyze a sample with a given equipment and leading to specific results

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 15220000 | Laboratory test (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Microbiology Microscopy Lab Testc
Antimicrobial Susceptibility Lab Testc
Microbiology Biomolecule Presence Lab Testc
Microorganism Identification Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has test kitop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has resultop
1 .. * Lab Resultc
has instrumentop
0 .. 1 Lab Analyzerc
Restrictions
has codeop : descendants of the given classes are allowed

sphn-loinc:LOINCc SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Notes

For sphn:hasResult, instances of sphn:AntimicrobialSusceptibilityResult, sphn:MicrobiologyBiomoleculePresenceResult, sphn:MicrobiologyMicroscopyResult, sphn:MicroorganismIdentificationResult are not allowed

sphn:hasCode allowed coding system: LOINC, SNOMED CT

Used in
(In the range of)
has lab testop

Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on a biological specimen at a given time

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Microbiology Microscopy Lab Test Eventc
Microbiology Biomolecule Presence Lab Test Eventc
Microorganism Identification Lab Test Eventc
Antimicrobial Susceptibility Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has report datetimedp
0 .. 1 xsd:dateTimec
has sampleop
0 .. 1 Samplec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has lab testop
1 .. * Lab Testc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
Restrictions None
Notes

For sphn:hasLabTest, instances of sphn:AntimicrobialSusceptibilityLabTest, sphn:MicrobiologyBiomoleculePresenceLabTest, sphn:MicrobiologyMicroscopyLabTest, sphn:MicroorganismIdentificationLabTest are not allowed

Laterality c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Laterality
Description

localization with respect to the side of the body

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 20228-3 | Anatomic part Laterality |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 7771000 | Left (qualifier value) |c SNOMED 24028007 | Right (qualifier value) |c SNOMED 51440002 | Right and left (qualifier value) |c SNOMED 66459002 | Unilateral (qualifier value) |c

Used in
(In the range of)
has lateralityop

Library Preparation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation
Description

process which results in the creation of a library from fragments of DNA

Schema representation
Meaning binding
(Equivalent-classes)
obi:OBI_0000711c
Parents
Sample Processingc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has gene panelop
0 .. 1 Gene Panelc
has quality control metricop
0 .. * Quality Control Metricc
has codeop
0 .. 1 Yes
has inputop
0 .. * Samplec
has administrative caseop
0 .. * Administrative Casec
has target enrichment kit codeop
0 .. 1 Codec or Terminologyc
has outputop
0 .. 1 Samplec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
0 .. 1 xsd:dateTimec
has intended insert sizeop
0 .. 1 Quantityc
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has predecessorop
0 .. * Sample Processingc
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has kit codeop
0 .. 1 Terminologyc or Codec
Restrictions
has code